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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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60 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AP5S1
ENSSSCG00000033297
ENSG00000125843
Adaptor related protein complex 5 sigma 1 subunit
Low tissue specificity
Detected in all
GDNF
ENSSSCG00000038727
ENSG00000168621
Glial cell derived neurotrophic factor
Tissue enhanced
Detected in many
liver:
10.8
penis:
9.8
skeletal muscle:
13.1
smooth muscle:
12.4
GLCE
ENSSSCG00000026078
ENSG00000138604
Glucuronic acid epimerase
Low tissue specificity
Detected in all
HAUS8
ENSSSCG00000036584
ENSG00000131351
HAUS augmin like complex subunit 8
Low tissue specificity
Detected in all
HERC2
ENSSSCG00000015853
ENSG00000128731
HECT and RLD domain containing E3 ubiquitin protein ligase 2
Low tissue specificity
Detected in all
IFN-ALPHA-1
ENSSSCG00000039164
Interferon-alpha-1 precursor
Tissue enhanced
Detected in many
salivary gland:
19.1
IFN-ALPHA-10
ENSSSCG00000034800
Interferon-alpha-10 precursor
Tissue enhanced
Detected in many
choroid plexus:
10.9
IFN-ALPHA-13
ENSSSCG00000033254
Uncharacterized protein LOC100152100 precursor
Tissue enhanced
Detected in many
fallopian tube:
3.2
IFN-ALPHA-14
ENSSSCG00000034088
Interferon-alpha-14 precursor
Low tissue specificity
Detected in many
IFN-ALPHA-15
ENSSSCG00000031149
Uncharacterized protein LOC100152504 precursor
Tissue enhanced
Detected in all
fallopian tube:
46.6
IFN-ALPHA-16
ENSSSCG00000039065
Uncharacterized protein LOC100157735 precursor
Tissue enhanced
Detected in many
fallopian tube:
24.4
IFN-ALPHA-17
ENSSSCG00000037797
Uncharacterized protein LOC100154938 precursor
Tissue enhanced
Detected in many
choroid plexus:
14.3
IFN-ALPHA-4
ENSSSCG00000032868
Interferon-alpha-4 precursor
Tissue enhanced
Detected in many
choroid plexus:
13.9
IFN-ALPHA-8
ENSSSCG00000037624
Sus scrofa interferon, alpha 5 (IFN-ALPHA-5), mRNA.
Low tissue specificity
Detected in many
IFN-ALPHA-9
ENSSSCG00000036535
Uncharacterized protein LOC100157766 precursor
Tissue enhanced
Detected in many
fallopian tube:
11.6
IFN-DELTA-1
ENSSSCG00000005152
Sus scrofa interferon-delta-2 (IFN-DELTA-2), mRNA.
Low tissue specificity
Detected in all
IFN-DELTA-10
ENSSSCG00000033330
Uncharacterized protein LOC100152129 precursor
Low tissue specificity
Detected in many
IFN-DELTA-11
ENSSSCG00000040246
Uncharacterized protein LOC100155754 precursor
Low tissue specificity
Detected in many
IFN-DELTA-3
ENSSSCG00000037750
Uncharacterized protein LOC100156558 precursor
Tissue enhanced
Detected in many
choroid plexus:
20.4
IFN-DELTA-4
ENSSSCG00000038862
Uncharacterized protein LOC100152899 precursor
Tissue enhanced
Detected in many
choroid plexus:
29.0
fallopian tube:
37.7
IFN-DELTA-5
ENSSSCG00000032099
Uncharacterized protein LOC100156933 precursor
Tissue enhanced
Detected in many
choroid plexus:
10.3
IFN-DELTA-6
ENSSSCG00000036510
Interferon-delta-6 precursor
Tissue enhanced
Detected in many
choroid plexus:
22.6
IFN-DELTA-9
ENSSSCG00000034940
Uncharacterized protein LOC100153721 precursor
Low tissue specificity
Detected in many
IFN-OMEGA-2
ENSSSCG00000033910
Interferon-omega-2
Low tissue specificity
Detected in many
IFN-OMEGA-3
ENSSSCG00000040502
Interferon omega 3 precursor
Tissue enhanced
Detected in many
cartilage:
16.6
IFN-OMEGA-4
ENSSSCG00000031850
Sus scrofa interferon omega 5 (LOC100157354), mRNA.
Tissue enhanced
Detected in many
cartilage:
25.9
IFN-OMEGA-6
ENSSSCG00000032368
Interferon omega 6 precursor
Tissue enhanced
Detected in all
fallopian tube:
36.8
IFN-OMEGA-7
ENSSSCG00000040054
Inferferon omega 7 precursor
Low tissue specificity
Detected in many
IFNA1
ENSSSCG00000037818
Interferon alpha-1 precursor
Tissue enhanced
Detected in many
choroid plexus:
18.8
fallopian tube:
15.1
LCLAT1
ENSSSCG00000025901
ENSG00000172954
Lysocardiolipin acyltransferase 1
Tissue enhanced
Detected in all
male glands:
46.5
LYSMD3
ENSSSCG00000024193
ENSG00000176018
LysM domain containing 3
Low tissue specificity
Detected in all
na
ENSSSCG00000005149
Tissue enhanced
Detected in many
choroid plexus:
20.0
na
ENSSSCG00000012602
ENSG00000171155
Tissue enhanced
Detected in all
male glands:
53.0
na
ENSSSCG00000016869
ENSG00000166037
Tissue enhanced
Detected in many
cervix:
7.8
na
ENSSSCG00000017077
ENSG00000135070
Tissue enhanced
Detected in some
heart:
6.4
liver:
6.0
retina:
5.6
na
ENSSSCG00000026051
Low tissue specificity
Detected in all
na
ENSSSCG00000026663
ENSG00000129480
Low tissue specificity
Detected in all
na
ENSSSCG00000029321
Low tissue specificity
Detected in all
na
ENSSSCG00000031075
Tissue enhanced
Detected in many
choroid plexus:
36.8
fallopian tube:
20.1
na
ENSSSCG00000033601
Low tissue specificity
Detected in all
na
ENSSSCG00000033603
Low tissue specificity
Detected in all
na
ENSSSCG00000033722
Low tissue specificity
Detected in many
na
ENSSSCG00000035188
Tissue enhanced
Detected in all
choroid plexus:
69.2
na
ENSSSCG00000035294
Tissue enhanced
Detected in many
choroid plexus:
31.1
na
ENSSSCG00000036134
Low tissue specificity
Detected in many
na
ENSSSCG00000036586
Tissue enhanced
Detected in many
heart:
20.1
na
ENSSSCG00000037603
Interferon alpha-2 precursor
Tissue enhanced
Detected in many
salivary gland:
14.9
na
ENSSSCG00000037708
Low tissue specificity
Detected in all
na
ENSSSCG00000037813
Low tissue specificity
Detected in all
na
ENSSSCG00000038373
Low tissue specificity
Detected in many
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